Actinobacteria is one of the largest bacterial phyla, comprised of Gram-positive bacteria. This phylum includes a wide range of species, with different morphological and physiological characteristics. Significant groups in the human colon include Actinomycetales and Bifidobacteriales. Actinomycetales were inversely associated with clinically significant depression in IBS patients, suggesting these bacteria may be depleted in depressed IBS patients. A strict vegetarian diet may increase the total count of Actinomyces spp. compared to following a Western diet.
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Acinetobacter junii, Actinobacteria, Actinomycetales, Adenovirus F40/41, Akkermansia muciniphila, Alistipes onderdonkii, Alistipes spp., Bacilli Class, Bacillus licheniformis, Bacteroides fragilis, Bacteroides pectinophilus, Bacteroides spp., Bacteroides spp. & Prevotella spp., Bacteroides stercoris, Bacteroides zoogleoformans, Bifidobacterium spp., Campylobacter (C. jejuni, C. coli and C. lari), Carbohydrates, Catenibacterium mitsuokai, Citrobacter farmeri / amalonaticus, Citrobacter freundii complex, Clostridia Class, Clostridioides difficile (Toxin A/B), Clostridium L2-50, Clostridium methylpentosum, Coprobacillus cateniformis, Cryptosporidium (C. parvum and C. hominis), Dialister invisus, Dialister invisus & Megasphaera micronuciformis, Dorea spp., Elastase, Entamoeba histolytica, Enterobacter cloacae complex, Enterobacteriaceae, Enterotoxigenic Escherichia coli (ETEC) lt/st, Escherichia coli O157, Escherichia spp., Eubacterium biforme, Eubacterium hallii, Eubacterium rectale, Eubacterium siraeum, Faecalibacterium prausnitzii, Firmicutes, Giardia duodenalis (AKA intestinalis & lamblia), Klebsiella pneumoniae, Klebsiella pneumoniae/variicola, Lachnospiraceae, Lactobacillus family, Lactobacillus ruminis & Pediococcus acidilactici, Lactobacillus spp., Lactococcus garvieae, Mycoplasma hominis, Norovirus GI/GII, Parabacteroides johnsonii, Parabacteroides spp., Phascolarctobacterium spp., Proteobacteria, RBC, Rotavirus A, Rothia dentocariosa, Rothia mucilaginosa, Ruminococcus albus & R. bromii, Ruminococcus gnavus, Salmonella spp., Secretory IgA, Shiga-like toxin-producing Escherichia coli (STEC) stx1/stx2, Shigella (S. boydii, S. sonnei, S. flexneri & S. dysenteriae), Streptococcus agalactiae & Eubacterium rectale, Streptococcus mutans, Streptococcus parasanguinis, Streptococcus salivarius, Streptococcus salivarius ssp., Streptococcus salivarius ssp. thermophilus, Streptococcus salivarius ssp. thermophilus & S. sanguinis, Streptococcus spp., Veillonella spp., Vibrio cholerae, Yeast
